Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| BLCA | rs61968222 | chr13:97499190 | G/A | 2.31E-6 | 401 | 18.23 | 13.77 | 21.53 | KM Plot |
| BLCA | rs62336073 | chr5:3505717 | T/C | 9.1E-6 | 405 | 17.23 | 19.92 | 4.37 | KM Plot |
| BLCA | rs62336074 | chr5:3513171 | G/A | 9.1E-6 | 405 | 17.4 | 19.77 | 4.37 | KM Plot |
| BLCA | rs62336077 | chr5:3516458 | G/A | 9.1E-6 | 405 | 17.4 | 19.77 | 4.37 | KM Plot |
| BLCA | rs62336081 | chr5:3528961 | G/A | 9.45E-6 | 405 | 17.07 | 20.07 | 4.37 | KM Plot |
| BLCA | rs62336082 | chr5:3534546 | T/C | 1.14E-5 | 402 | 17.03 | 20.07 | 4.37 | KM Plot |
| BLCA | rs62336107 | chr5:3539570 | T/C | 9.67E-6 | 405 | 17.4 | 19.77 | 4.37 | KM Plot |
| BLCA | rs62337684 | chr5:3491889 | G/C | 1.04E-5 | 403 | 17.4 | 19.4 | 4.37 | KM Plot |
| BLCA | rs62338651 | chr5:3472166 | C/A | 1.04E-5 | 403 | 17.4 | 19.4 | 4.37 | KM Plot |
| BLCA | rs62510205 | chr8:61361267 | G/A | 1.1E-6 | 395 | 17.87 | 16.1 | 4.88 | KM Plot |
| BLCA | rs6484862 | chr11:36560795 | A/G | 1.41E-9 | 405 | 3.6 | 17.57 | 17.87 | KM Plot |
| BLCA | rs66615663 | chr4:119336701 | C/T | 1.04E-9 | 399 | 17.4 | 20.33 | 2.13 | KM Plot |
| BLCA | rs6696749 | chr1:4241879 | C/G | 4.15E-6 | 396 | 11.33 | 19.42 | 17.4 | KM Plot |
| BLCA | rs67686161 | chr4:119336720 | C/T | 1.04E-9 | 399 | 17.4 | 20.33 | 2.13 | KM Plot |
| BLCA | rs67928655 | chr4:119336525 | C/A | 1.04E-9 | 399 | 17.4 | 20.33 | 2.13 | KM Plot |